1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaatttgggaaattcctgaccatgtgtaatcccttttttatccctcaataaaatatgaatggctccaaaactcatctggctatgcatgattcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTGTCAATAAAGTTAAAG
species | Glycine max |
transcript | GLYMA20G03010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|213617901|gb|DB967291.1|DB967291
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|213618347|gb|DB967668.1|DB967668
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|18040031|gb|BM308325.1|BM308325
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|298165265|gb|HO011314.1|HO011314
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|298193496|gb|HO034102.1|HO034102
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|192302416|gb|FG995900.1|FG995900
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTEST: gi|254327607|gb|GR840171.1|GR840171
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
EST: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAG AATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
genomic: CTGCTCGAACTGTGCAACATAGCTCTTCAACTCATTTCCGTGCCTTTCAGgtttccccat ... tcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTT
caataaaatatgaatggctccaaaactcatctggctatgcatgattcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTGTCAATAAAGTTAAAG
ttcttttgc CT-rich tract
aaatatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttgggaaattcctgaccatgtgtaatcccttttttatccctcaataaaatatgaatggctccaaaactcatctggctatgcatgattcttttgcagAATTTTTTACCAGAAGCAGTATCACAGTATAGAACATATGAAGATGCTTTTGTCAATAAAGTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - -ctgacca
- - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat