1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcaagccaactttgtcttattgtgtgtttcccaaaagttcagtaatgttcatttctcattgtttttctctcttcctcaaacacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAACGGATAATGAAGATCAACGAGTTAGGGGTTCCTGTGTGATTGAATTAAT
species | Glycine max |
transcript | GLYMA20G03010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAAEST: gi|51335202|gb|CO979068.1|CO979068
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAAEST: gi|254327608|gb|GR840172.1|GR840172
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATTTTCGCTGAACAAAEST: gi|192302417|gb|FG995901.1|FG995901
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATTTTCGCTGAACAAAEST: gi|31473030|gb|CD415058.1|CD415058
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAAEST: gi|214005563|gb|DB984571.1|DB984571
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAAEST: gi|214005434|gb|DB984913.1|DB984913
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAAEST: gi|214005323|gb|DB988871.1|DB988871
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
agttcagtaatgttcatttctcattgtttttctctcttcctcaaacacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAACGGATAATGAAGATCAACGAGTTAGGGGTTCCTGTGTGATTGAATTAAT
attgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagccaactttgtcttattgtgtgtttcccaaaagttcagtaatgttcatttctcattgtttttctctcttcctcaaacacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAACGGATAATGAAGATCAACGAGTTAGGGGTTCCTGTGTGATTGAATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA