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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtataatcagttaaaggatgtgacttatttgattaactgcttaagtatgccttaagtttattaattccaataaatgattaaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGAAACCCGAGCTGCTG

Basic information

species Glycine max
transcript GLYMA20G03010.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772153|gb|BG237080.1|BG237080
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|51335202|gb|CO979068.1|CO979068
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|213618347|gb|DB967668.1|DB967668
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCA
EST: gi|18040031|gb|BM308325.1|BM308325
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAA-TCAGCATACA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACA
EST: gi|254327608|gb|GR840172.1|GR840172
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|192302417|gb|FG995901.1|FG995901
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|192302416|gb|FG995900.1|FG995900
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|31473030|gb|CD415058.1|CD415058
EST:     AGGTCAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|214005563|gb|DB984571.1|DB984571
EST:     CATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: CATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|214005434|gb|DB984913.1|DB984913
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|214005323|gb|DB988871.1|DB988871
EST:     AGGACAACTGGTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
EST: gi|254327607|gb|GR840171.1|GR840171
EST:     AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGT                         GAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA
genomic: AGGACAACTCTTGCTGAGAAGGAAATGAAATATGGGCATACGGAACTAGTgtatgtataa ... aaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgcttaagtatgccttaagtttattaattccaataaatgattaaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGAAACCCGAGCTGCTG
                        tattaat  putative branch site (score: 2)
                 ttaagtttattaattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtataatcagttaaaggatgtgacttatttgattaactgcttaagtatgccttaagtttattaattccaataaatgattaaattcatagGAGTGCCGGAACCCAATTTCAACAGCTGGCAAAATCAGCATACAAGGTTGAAACCCGAGCTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT