1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCCAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactcagttgaacaatcaagatgcatcccttatctatgttcttacgtactgctgctctctatttgtgatgcataacctgctttttcttattttgtaacttgatttcttaagatctttactttttacatgaatgtttatgaag
species | Glycine max |
transcript | GLYMA20G03010.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|213617901|gb|DB967291.1|DB967291
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGNGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|213618347|gb|DB967668.1|DB967668
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|18040031|gb|BM308325.1|BM308325
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|298165265|gb|HO011314.1|HO011314
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|254327608|gb|GR840172.1|GR840172
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|192302417|gb|FG995901.1|FG995901
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTTTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|298193496|gb|HO034102.1|HO034102
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|192302416|gb|FG995900.1|FG995900
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|31473030|gb|CD415058.1|CD415058
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTGEST: gi|254327607|gb|GR840171.1|GR840171
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
EST: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAG GCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
genomic: CAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactca ... gtttatgaagGCGCGATATGCTAGAATTGAGAAGAATGTAAAGGACTTGAACCTTTCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCAAGAAGGTTTCTGTTTCGCCATACATTGGGTCGATTCCAAAGTGAGGAGgtattactcagttgaacaatcaagatgcatcccttatctatgttcttacgtactgctgctctctatttgtgatgcataacctgctttttcttattttgtaacttgatttcttaagatctttactttttacatgaatgtttatgaag
- - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG