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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatccaatacattccttgtctatactttgaattattgtagacttgtgagttttgttagctctgaagtaatttgttttgctttcctgccataatatgtagATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGAT

Basic information

species Glycine max
transcript GLYMA20G02950.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02950.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 3
ttatccaatacattccttgtctatactttgaattattgtagacttgtgagttttgttagctctgaagtaa-tttgttttgcttt---cctgc-cataatatgtagATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGAT
 |     ||  |  | |  |     |||   |||  |  |   |  |     ||| ||| | |  | | | ||| |||  ||||   ||||| || |||    ||||||||| ||||| |  ||||| || |||||| ||||||| |||||||| || || ||||||||||| ||||| || ||||| |   | || ||||||||
-tgattgatgaaggcttgatagcctcttgtcatttcttcaccatcata----ttggtagttgtatatttactttatttcccttttcacctgctcacaatgaccagATTGCTGCGATGGGAGTGATGAGTATGATGGTAAAGTAAAATGTCCAAACACATGTTGGGAGGCTGGAAAAGTGGCCAGAGATAAGTTAAAGAAAAAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttttgttagctctgaagtaatttgttttgctttcctgccataatatgtagATTGCTGTGATGGAACCGATGAATACGATGGTCAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGTAAAGTTGCTAGAGACAGACTGAAAAAAAAGAT
                   aagtaatttgtttt  TA-rich tract