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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtattatagtgcttagtgtagttgcacatggaaagaagaacttgaaaggctctaatttgtggaccctctgggatttaatggctttgcgttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA

Basic information

species Glycine max
transcript GLYMA20G02950.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02950.2 (Glycine max), 3'ss of exon 11
lower sequence: AT5G56360.1 (Arabidopsis thaliana), 3'ss of exon 13
-------------------------------ttgtattat-agtgcttagtgtagttgcac----atggaaagaagaacttgaaaggctcta---atttgtggac-cctctgggattta-atggctttgcgttttga------acagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA
                               ||||   || | |  ||  |  | ||  |     ||  ||| ||  |  ||| | | | |      |||   |   | | | ||| || |  ||||  |  | | |       ||||| ||  ||||||| ||||||||||| ||| |||  ||||| ||||||||||||||||||||
gtagtgtctgattacattaaatccaaactaattgttcaattaatattttctccaattatatttatataaaaaaaattatctgagaagatttttgcgcttgcaaagatcacagagatatacaaagcttgactgtctcactaaatgcagGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGA

upper sequence: GLYMA20G02950.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 13
ttgtattatagtgcttagtgtagttgcacatggaaagaaga--acttgaaaggctctaatttgtggaccctctgggatttaatggctttgcgttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA
|  | | |||||   | |   |   ||  || |      |   | | ||    ||  ||||| |   || | |    |||      ||| | |||| ||||||||||| ||||||| ||||||||||| ||| |||||||||| |||||||||||| | |||||
tcatctaatagtaaatgggtcatgagctaataggcctttgtttaatggatgatctacaatttttttcccttttcccttttccc--ttttccctttttaacagGTCAAGCTAAGATGTGGGTTGAAAAATGAGGTTACTGATGTTGATGAACCAAGCAGATGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344791|gb|CO985524.1|CO985524
EST:     TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAG                         GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
genomic: TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAGgttatatgtt ... ttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
EST: gi|21601739|gb|BQ612070.1|BQ612070
EST:     TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAG                         GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
genomic: TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCAGATAGGAGTTTGAAGgttatatgtt ... ttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
EST: gi|213602617|gb|DB978088.1|DB978088
EST:     AGATAGGAGTTTGAAG                         GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
genomic: AGATAGGAGTTTGAAGgttatatgtt ... ttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaggctctaatttgtggaccctctgggatttaatggctttgcgttttgaacagGTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA
                             atttaat  TA-rich tract