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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTACAACTCAAACTAGACCTTTTGAATTCGGAAATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttactaggctgtgattctttttcttgagacttgagtcccgagttgatcaaattttattttgaacag

Basic information

species Glycine max
transcript GLYMA20G02950.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31472042|gb|CD414070.1|CD414070
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|214004191|gb|DB989308.1|DB989308
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAAC--                         -T-GTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|51344791|gb|CO985524.1|CO985524
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|193415814|gb|FK377568.1|FK377568
EST:     CCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: CCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|21601739|gb|BQ612070.1|BQ612070
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|193441407|gb|FK410060.1|FK410060
EST:     ACCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
EST: gi|213602617|gb|DB978088.1|DB978088
EST:     ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTG                         GTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA
genomic: ATACCAGCAAACCATGACGAGTTGTGAACAACCGGGACAGATTTTAACTGgtaattttac ... ttttgaacagGTAGTATGATGATCATAGAGCAAATGAAGAAGTGGTGCCCTAAGTTTTGTA