Sequence
atgc intronic sequence ATGC exonic sequencegtttttatttaaattattaattgtttaataattaatagtatctgattaattttatttgcttcatattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG
Basic information
species | Glycine max |
transcript | GLYMA20G02950.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02950.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 2
gtttttatttaaattattaattgtttaataattaatagtatctgattaattttatttgcttcatattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG
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--tttcttttgagttcatagtaac---aggatttgcagttgtt--ttgatctt--tgatcctacatagaattctcttcatatgttggcaaattac--------cttgtgggttgtagGAACTTCGGCATGCCCGGGTGGAAAATTCTATTGTCGGAATGCAGGACATGTTCCTCTGTTGTTATTTTCCTCTAGAGTGAACGATGGTATCTGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213602878|gb|DB972452.1|DB972452EST: TCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTG GTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATT
genomic: TCAGTTCAATGATGATTTCTGCGATTGTGCTGATGGCACCGATGAACCTGgtttttattt ... tggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattggatcctttgctgtttctggaattctctgttttatttttttggggggcagGTACATCGGCATGTCCTGGTGGAAAATTCTATTGTCGGAATGCAGGACATTCTCCTGTTTACTTGTTTTCATCTAGAGTGAACGACGGAATTTGTG
ttctctgttttatttt CT-rich tract
aattctctgttttatt TA-rich tract