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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattgctgtcttgtttttctctgctgctatctcctcttttttgtcaaaattttctatgtgatactctcctttttctcattgttgtctcactggcctcatggcag

Basic information

species Glycine max
transcript GLYMA20G02950.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02950.2 (Glycine max), 5'ss of exon 12
lower sequence: AT5G56360.1 (Arabidopsis thaliana), 5'ss of exon 14
GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtaggga-ttgctgtcttgtttttctctgctgctatctcctcttttttgtcaaaattttctatgtgatactctcctttttctcattgttgtctcactggcctcatggcag
|| ||  ||||||| ||||||||||| ||| |||  ||||| ||||||||||||||||||||||| |   ||   ||    |   ||||    |  |||  ||| ||||      | ||||   | | |||  ||    ||| | | | |  | |  | |            
GTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGAgtaagttcttatcgtaacctacatctcacgggtcatcatctccttttatctccagtttttctttttatatccttaaattttt-actctcttgttgcag------------

upper sequence: GLYMA20G02950.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 5'ss of exon 14
GTCAAGTTAAGATGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattgctgtcttgtttttctctgctgctatctcctcttttttgtcaaaattttctatgtgatactctcctttttctcattgttgtctcactggcctcatggcag
|||||| ||||||| ||||||||||| ||| |||||||||| |||||||||||| | |||||||| ||                 ||||  |  | |  |     | |||||||       ||  |  |  |    | | ||| | |  | | | |      |||||||||
GTCAAGCTAAGATGTGGGTTGAAAAATGAGGTTACTGATGTTGATGAACCAAGCAGATGCGAgtaagg-----------------ctctatttttgtaactaacctcttgtcaaggcaga-tacatagtgtt----tctctctgacttgtatttta------tcatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004191|gb|DB989308.1|DB989308
EST:     TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCTGTATAATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
genomic: TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattg ... ctcatggcagATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
EST: gi|51344791|gb|CO985524.1|CO985524
EST:     TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
genomic: TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattg ... ctcatggcagATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
EST: gi|21601739|gb|BQ612070.1|BQ612070
EST:     TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
genomic: TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattg ... ctcatggcagATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
EST: gi|213602617|gb|DB978088.1|DB978088
EST:     TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA
genomic: TGCGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggattg ... ctcatggcagATATGTAGCTGTATTATCTACCCCGACCCTTTGCCAAGAGGAAAGGCTGAA