1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...gaatttcacctgcggttttgcatcagtactctttaatccgaaacattattctttcatttgttagttatcttatatattttgtattttgatttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCACCGTACCTTCCAAGAAGCTCGCTGGAAACCCACGTTCCGTATGCCATT
species | Glycine max |
transcript | GLYMA20G02370.2 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AAACTTCTTCTTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCTEST: gi|193475994|gb|FK441291.1|FK441291
genomic: AAACT-CT-CT-GCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCT
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGEST: gi|7685519|gb|AW756167.1|AW756167
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCG
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCEST: gi|208214546|gb|GE011981.1|GE011981
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCEST: gi|26056306|gb|CA799220.1|CA799220
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATC
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCEST: gi|193396488|gb|FK363236.1|FK363236
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCAATACTCGTAAGACACAACTTATCTEST: gi|58019960|gb|CX706702.1|CX706702
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCA-T-CTCGTA-G-CACAACTTATCT
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCEST: gi|51345056|gb|CO985789.1|CO985789
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
EST: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAG ATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
genomic: GTGAAACTCTCTGCAGATATCATACTGGATTCTTGGAGCGAAACACACAGgtaaatatat ... ttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTC
ttattctttcatttgttagttatcttatatattttgtattttgatttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCACCGTACCTTCCAAGAAGCTCGCTGGAAACCCACGTTCCGTATGCCATT
ttttgat putative branch site (score: 4)
atttgttagttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttcacctgcggttttgcatcagtactctttaatccgaaacattattctttcatttgttagttatcttatatattttgtattttgatttatgcacagATCTCATCTCGTAGCACAACTTATCTTCTTAGACCAACTTTGTGAGATTTCACCGTACCTTCCAAGAAGCTCGCTGGAAACCCACGTTCCGTATGCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA