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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtcttatatgcatccactccctctgtatcaaattgtactgtttctgaatcaaatatcgttcattctgccattattaacacatcaagctatttgtgcagTACATGAGAGAATGCATTCTTGGCAACTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAACGATCTTCAACGGCCTACCGTTCTAGAATCACTGA

Basic information

species Glycine max
transcript GLYMA20G02370.2
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 3'ss of exon 21
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 20
--aagtcttata--tgcatccactccctctgtatcaaattgtactgtttctgaatcaaatatcgttcattctgccattattaacacatcaagctatttgtgcagTACATGAGAGAATGCATTCTTGGCAACTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAACGATCTTCAACGGCCTACCGTTCTAGAATCACTGA
   |||  | ||  ||  |    |   |   |   || || || |    |   || | || |   | ||||   || |||      | | |      ||||||||| |||||||||||||| ||||| ||||||||||| ||| |||||  ||| || ||||||||||| ||||||||||| ||| | ||||| ||||| ||| 
ctgagtaatgtaaatgtgtttgttggtttacttggaacttata-tccacccacattagatttttgtgattc---cagtatagcattacctattgcactgtgcagTATATGAGAGAATGCATCCTTGGGAACTTCAGAAGGAGACTGCTTACTGTACTAAAAACTGATAATGATCTTCAACGACCTTCTGTTCTGGAATCGCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaatcaaatatcgttcattctgccattattaacacatcaagctatttgtgcagTACATGAGAGAATGCATTCTTGGCAACTTCAGAAGAAGATTGCTTGGTGTTCTGAAAACTGATAACGATCTTCAACGGCCTACCGTTCTAGAATCACTGA
                            tattaac  putative branch site (score: 1)
                          attattaaca  TA-rich tract