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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttagagcttccagacattttttctctctagtaaataaaaaaaaatatgtaaaaaacttgaagagataattatggcgtagttgttctttttttctgcagATGTGTAGATGAATTGGAATCTGTGCTTTCAAAGCATGGCAGTCTTAGGAGGCTGTATTTCTACCACCAACACCTCACAGCT

Basic information

species Glycine max
transcript GLYMA20G02370.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 15
---agttagagc--ttccagacattttttctctctagtaaataaaaaaaaatatgtaaaaaacttgaagagataattatggc-gtagttgttctttttttctgcagATGTGTAGATGAATTGGAATCTGTGCTTTCAAAGCATGGCAGTCTTAGGAGGCTGTATTTCTACCACCAACACCTCACAGCT
      ||   |  |  ||  ||    | | | |    |  |  | |   | |   | || ||      | || || |||||    || | | | |||   ||||||||||| |||||| ||||||||  ||| |||||||||||||||||||| |  |||||||||||||| || |||||  |||| 
tctctctaacacaatcacatgcacgcatgcacccatccattttgacatggacacacagaagac------acatgataatggccactgtggatgtgtttcaatgcagATGTGTTGATGAACTGGAATCTCAGCTATCAAAGCATGGCAGTCTTAGAAAACTGTATTTCTACCATCAGCACCTTGCAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtaaaaaacttgaagagataattatggcgtagttgttctttttttctgcagATGTGTAGATGAATTGGAATCTGTGCTTTCAAAGCATGGCAGTCTTAGGAGGCTGTATTTCTACCACCAACACCTCACAGCT
                                    ttgttctttttttctg  CT-rich tract
     taaaaaactt  TA-rich tract