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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtccatattccatcccacctaattcatttcttcaatttctctagaattatgcctagtttatatgctattactttaaccttagggtatgaaatttgaaatttactagtcactttagtttattttccattttaacccacactatgttcctattcctatataagGTTTTTAGAAACACCATGTTTGGTCCAGAAGGGCGTCCTCAACATTGTTGTGCATGGCTTGGGATCGCTAGTAGTTTTCCAGAGTGTGCATCTTCAATTG

Basic information

species Glycine max
transcript GLYMA20G02370.2
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 16
gttagtgtccatattccatcccacctaattcatttcttcaatttctctagaattatgcctagtttatatgctattact-ttaaccttagggtatgaaatttgaaatttactagtcact-ttagtttattttccattttaacccacactatgttccta-ttcctatataagGTTTTTAGAAACACCATGTTTGGTCCAGAAGGGCGTCCTCAACATTGTTGTGCATGGCTTGGGATCGCTAGTAGTTTTCCAGAGTGTGCATCTTCAATTG
                            |   ||  | |  | ||| |    || ||| |  |   |      |||||  |  | ||  | ||     ||| | ||||| |  |  || |  ||  |   |   |||  |    || | |     || ||  || |  |||| || || |||||||||||||| || |||||||||||||| ||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||||||
---------------------------gtaagttcttcccgtgtctttg--cttctgcttgttaggttcctggttactgctgcctttttgttacatcttttaagatttatttcttcctatctgtggagcatgtttttgtagtaccagtctaacattaattgttaaaacagGTATTCAGGAACACCATGTTTGGACCGGAAGGGCGTCCTCAGCATTGCTGTGCATGGCTTGGTGTGGCTAGTAGTTTTCCAGAGTGTGCTTCTTCAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactttagtttattttccattttaacccacactatgttcctattcctatataagGTTTTTAGAAACACCATGTTTGGTCCAGAAGGGCGTCCTCAACATTGTTGTGCATGGCTTGGGATCGCTAGTAGTTTTCCAGAGTGTGCATCTTCAATTG
                    ttttaac  putative branch site (score: 2)
                                     ttcctattcct  putative PPT
     ttagtttattttccat  TA-rich tract