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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcag

Basic information

species Glycine max
transcript GLYMA20G02270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G30070.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagat--tcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcag
 |||| || | | |||| |||||||||||||||||||| ||||||||||  ||||||||||| | |   ||| ||  ||||| |||   ||||    |   ||||      ||  ||||     |   | |   |||   | ||    ||| |||  ||  ||||             
ATTAAACCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGGATGATGAAGgtaaaaggatctcttaattcttgagt---ctgaga--aacatgttagtgcatttcgcat-----tggttgcttatggtgtcttttcttttgtcttg-acactgcag------------

upper sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G30070.2 (Arabidopsis thaliana), 5'ss of exon 4
---------------------CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagat--tcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcag
                      |||| || | | |||| |||||||||||||||||||| ||||||||||  ||||||||||| | |   ||| ||  ||||| |||   ||||    |   ||||      ||  ||||     |   | |   |||   | ||    ||| |||  ||  ||||             
TACTGTTTGTTGTTTGTTCAGATTAAACCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGGATGATGAAGgtaaaaggatctcttaattcttgagt---ctgaga--aacatgttagtgcatttcgcat-----tggttgcttatggtgtcttttcttttgtcttg-acactgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208273458|gb|GE070660.1|GE070660
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208204483|gb|GE007834.1|GE007834
EST:     CCAATGGCGGGAATTTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CCAATGGCGGGAA-TTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207788423|gb|GD763285.1|GD763285
EST:     GGCGGGAATTATGGACGTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207720217|gb|GD703976.1|GD703976
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|18722904|gb|BM523426.1|BM523426
EST:     ATCTGGATTTTTAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208258628|gb|GE055033.1|GE055033
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208216903|gb|GE015215.1|GE015215
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATGTGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208326393|gb|GE121517.1|GE121517
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193384284|gb|FK349310.1|FK349310
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208055146|gb|GD853695.1|GD853695
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAGAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193601242|gb|FK553061.1|FK553061
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|18040363|gb|BM308657.1|BM308657
EST:     TCTGGACAAAGAGAAAGACCCAATGGCGGGGATTATGGACATGATGAANG                         A-TATGTATGANGATGGGGACGATGAGATGAAGAANACCATGGCAANAGC
genomic: TCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAA-Ggtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|193719585|gb|FK652223.1|FK652223
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207714789|gb|GD695581.1|GD695581
EST:     GGCGGGAATTATGGACTATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAGGC
genomic: GGCGGGAATTATGGAC-ATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|207796692|gb|GD768418.1|GD768418
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208179964|gb|GD975367.1|GD975367
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAGACCATTGCAAAAGC
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|192304723|gb|FG998767.1|FG998767
EST:     ATTTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192327109|gb|FK015501.1|FK015501
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193403486|gb|FK366856.1|FK366856
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193396074|gb|FK361829.1|FK361829
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|151411717|gb|EV281528.1|EV281528
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193601011|gb|FK552564.1|FK552564
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAGAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193618963|gb|FK569811.1|FK569811
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193430326|gb|FK397710.1|FK397710
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207709840|gb|GD689642.1|GD689642
EST:     GGCGGGAATTATGGACATGATGAAG                         GATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208256929|gb|GE051374.1|GE051374
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGGGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|120494083|gb|EH222250.1|EH222250
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208100282|gb|GD897990.1|GD897990
EST:     CGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208274814|gb|GE069706.1|GE069706
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|5752624|gb|AI959911.1|AI959911
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207771689|gb|GD744340.1|GD744340
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193575145|gb|FK530718.1|FK530718
EST:     GGCGGGAATTACGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|213606853|gb|DB961036.1|DB961036
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAA-CCATTGCAAA-GCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|254326748|gb|GR836357.1|GR836357
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208138879|gb|GD938541.1|GD938541
EST:     TGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: TGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207760242|gb|GD733229.1|GD733229
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208162969|gb|GD964331.1|GD964331
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193626483|gb|FK574387.1|FK574387
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192318966|gb|FK009046.1|FK009046
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAA-GCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193474378|gb|FK440809.1|FK440809
EST:     GGCGGGAATTATGGACATGATGAAG                         GATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193705194|gb|FK644404.1|FK644404
EST:     GGCGGGAATTATGGACATTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
genomic: GGCGGGAATTATGGACA-TGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|207842043|gb|GD813703.1|GD813703
EST:     AATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: AATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208197548|gb|GD999777.1|GD999777
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208265540|gb|GE062732.1|GE062732
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208068472|gb|GD862318.1|GD862318
EST:     CGGGAATTATGGTACATGATGAAG                         AATATGTATGAGGAT-GGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CGGGAATTATGG-ACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208271425|gb|GE072631.1|GE072631
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207775241|gb|GD750242.1|GD750242
EST:     AATTATGGACGTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: AATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|298184669|gb|HO029882.1|HO029882
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATG
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATG
EST: gi|7233032|gb|AW568383.1|AW568383
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193554342|gb|FK513443.1|FK513443
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|213617313|gb|DB978967.1|DB978967
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193635853|gb|FK580390.1|FK580390
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192329539|gb|FK021881.1|FK021881
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207683019|gb|GD665432.1|GD665432
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193556767|gb|FK516064.1|FK516064
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193325809|gb|FK290248.1|FK290248
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208221758|gb|GE018670.1|GE018670
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193328871|gb|FK293561.1|FK293561
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|151407955|gb|EV277770.1|EV277770
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207762501|gb|GD731654.1|GD731654
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|5753065|gb|AI960352.1|AI960352
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|209705506|gb|BW673527.1|BW673527
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208266880|gb|GE060959.1|GE060959
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193699067|gb|FK636260.1|FK636260
EST:     GGCGGGAATTACGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193396112|gb|FK361867.1|FK361867
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193382529|gb|FK347112.1|FK347112
EST:     GGCGGGAATTATGGACAATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGC-AAAGC
genomic: GGCGGGAATTATGGAC-ATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|5760822|gb|AI966185.1|AI966185
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGA
EST: gi|26059620|gb|CA802534.1|CA802534
EST:     ATCTGGACNAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATTAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207726768|gb|GD702482.1|GD702482
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|15812718|gb|BI784993.1|BI784993
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58023697|gb|CX710438.1|CX710438
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208171425|gb|GD973222.1|GD973222
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193524629|gb|FK481968.1|FK481968
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58024773|gb|CX711514.1|CX711514
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|254326747|gb|GR836356.1|GR836356
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192318995|gb|FK009047.1|FK009047
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208051115|gb|GD849012.1|GD849012
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58023460|gb|CX710201.1|CX710201
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcag

- - - - - - - - -  AAGAGA