Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagtatgcccaaacacactgtaagttaacagtaacattattggtcaacagtatcaaattcctcccgatgattatgcttcttgtattcgttctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTTAAGTCGATGTCATTCGATGTTAAGTTCCATGATGTTCAAGGGAAGAACT

Basic information

species Glycine max
transcript GLYMA20G02270.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304722|gb|FG998766.1|FG998766
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|193573786|gb|FK528418.1|FK528418
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|8827736|gb|BE211466.1|BE211466
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|298196142|gb|HO044533.1|HO044533
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|18040363|gb|BM308657.1|BM308657
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|208310068|gb|GE109796.1|GE109796
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|192304723|gb|FG998767.1|FG998767
EST:     TCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: TCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|8825966|gb|BE209696.1|BE209696
EST:     TGCCGCACCTCGCGTCG-TCAGTT-GGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: TGCGGCA-CTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|192327109|gb|FK015501.1|FK015501
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|151411717|gb|EV281528.1|EV281528
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|209707223|gb|BW656841.1|BW656841
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|5752624|gb|AI959911.1|AI959911
EST:     CTCGCGTCGTTCAGTTGGGACCAGGATAGTGACACAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTNT
genomic: CTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|193623230|gb|FK577310.1|FK577310
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|207794744|gb|GD764831.1|GD764831
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|213606853|gb|DB961036.1|DB961036
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|254326748|gb|GR836357.1|GR836357
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|208146916|gb|GD949231.1|GD949231
EST:     TTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: TTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|192318966|gb|FK009046.1|FK009046
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|298175712|gb|HO018309.1|HO018309
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|193300325|gb|FK266694.1|FK266694
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|298184891|gb|HO030104.1|HO030104
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|298184669|gb|HO029882.1|HO029882
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|193698702|gb|FK635419.1|FK635419
EST:     ATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|192329539|gb|FK021881.1|FK021881
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|151407955|gb|EV277770.1|EV277770
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|7233986|gb|AW569327.1|AW569327
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|207733306|gb|GD710066.1|GD710066
EST:     CGGCACTCGCGTCGTTACAAGTTAGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: CGGCACTCGCGTCGTT-C-AGTT-GGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|5760822|gb|AI966185.1|AI966185
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|208262971|gb|GE061551.1|GE061551
EST:     TTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: TTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|208268824|gb|GE071667.1|GE071667
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGGATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|26059620|gb|CA802534.1|CA802534
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|58023697|gb|CX710438.1|CX710438
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|58024773|gb|CX711514.1|CX711514
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|254326747|gb|GR836356.1|GR836356
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|192318995|gb|FK009047.1|FK009047
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
EST: gi|58023460|gb|CX710201.1|CX710201
EST:     ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAG                         ATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT
genomic: ATGCGGCACTCGCGTCGTTCAGTTGGGACCAGGATAGTGACAAAGTTAAGgtaaagagtc ... tctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacagtatcaaattcctcccgatgattatgcttcttgtattcgttctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTTAAGTCGATGTCATTCGATGTTAAGTTCCATGATGTTCAAGGGAAGAACT
                                        ttcgttcttt  CT-rich tract
      tatcaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atagtatgcccaaacacactgtaagttaacagtaacattattggtcaacagtatcaaattcctcccgatgattatgcttcttgtattcgttctttgacagATATATGTGTTAATGGAGGGAATCGATGAGAATAAGGTTGAATCCGAGTTTAAGTCGATGTCATTCGATGTTAAGTTCCATGATGTTCAAGGGAAGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- agtatgc
- - - - -ccaaaca
- - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc