Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagattcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCATGGACTGATGCTAGAACTGGGAAAACTGCTGACCCTTTAAGTAGCTACC

Basic information

species Glycine max
transcript GLYMA20G02270.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02270.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g03510.t01 (Vitis vinifera), 3'ss of exon 4
gtcagattcttttttttctttagttggctgaagctactt-tgttttaattt-tatgcatgtaactatgtac-------------ccttgggaacattcaacttgacttttactatgca-----------tgtaatat------tgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCATGGACTGATGCTAGAACTGGGAAAACTGCTGACCCTTTAAGTAGCTACC
|| |||||   ||  ||  |  | | ||||    ||  | ||| |   |     || ||  ||  ||| ||               |||   |  ||    |||  || | |||| |            ||| ||||      ||||||||||||||||||| ||||| ||||| |||||  |||| ||||| ||||||||| ||||||| ||| |||| || || || |||||  | |   | || |
gtgagatttccttcatttctgtgcttgctgtgtatatgtatgtgtgggtgcacgtggatacaagcatgcacatactcaaccttattttgatgattttatttttgctttatgctattccattctgaaaactgtgatatgcaaattgcagAATATGTATGAGGAAGGGGATGATGAAATGAAACAAACAATTGCTAAAGCATGGTCTGATGCAAGATCTGGCAAGACAGCAGACCCACTGAAGGGATATC

upper sequence: GLYMA20G02270.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S219_73V6.3 (Physcomitrella patens), 3'ss of exon 5
gtcagattcttttttttctttagttggctgaagctactttgttttaattttatgcatgtaactatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCATGGACTGATGCTAGAACTGGGAAAACTGCTGACCCTTTAAGTAGCTACC-
             |||   |  | ||   |  |||       ||   | | | |    |     |  |   || ||      |    ||| ||| | | |     |  |  || |||| ||||| || || || ||||||||||||||||||||||| || || ||||||||||||||| |  |||||||  |||       || ||||  | |   
------------ctttcggtatggtgatggtcgctttcaaacttcgctctca-gttcttgttcttccaggtttcggttttcgcgttctgattttgattgtat---tgtttctgtagAACATGTACGAAGAGGGTGACGATGAGATGAAGAAAACCATAGCCAAGGCATGGACTGATGCTCGGTCTGGGAAGCCTGGAATGGGTTCAAGTT-CGATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208273458|gb|GE070660.1|GE070660
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208204483|gb|GE007834.1|GE007834
EST:     CCAATGGCGGGAATTTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CCAATGGCGGGAA-TTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207788423|gb|GD763285.1|GD763285
EST:     GGCGGGAATTATGGACGTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207720217|gb|GD703976.1|GD703976
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|18722904|gb|BM523426.1|BM523426
EST:     ATCTGGATTTTTAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208258628|gb|GE055033.1|GE055033
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208216903|gb|GE015215.1|GE015215
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATGTGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208326393|gb|GE121517.1|GE121517
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193384284|gb|FK349310.1|FK349310
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208055146|gb|GD853695.1|GD853695
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAGAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193601242|gb|FK553061.1|FK553061
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|18040363|gb|BM308657.1|BM308657
EST:     TCTGGACAAAGAGAAAGACCCAATGGCGGGGATTATGGACATGATGAANG                         A-TATGTATGANGATGGGGACGATGAGATGAAGAANACCATGGCAANAGC
genomic: TCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAA-Ggtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|193719585|gb|FK652223.1|FK652223
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207714789|gb|GD695581.1|GD695581
EST:     GGCGGGAATTATGGACTATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAGGC
genomic: GGCGGGAATTATGGAC-ATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|207796692|gb|GD768418.1|GD768418
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208179964|gb|GD975367.1|GD975367
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAGACCATTGCAAAAGC
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|192304723|gb|FG998767.1|FG998767
EST:     ATTTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192327109|gb|FK015501.1|FK015501
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193403486|gb|FK366856.1|FK366856
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193396074|gb|FK361829.1|FK361829
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|151411717|gb|EV281528.1|EV281528
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193601011|gb|FK552564.1|FK552564
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAGAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193618963|gb|FK569811.1|FK569811
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193430326|gb|FK397710.1|FK397710
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207709840|gb|GD689642.1|GD689642
EST:     GGCGGGAATTATGGACATGATGAAG                         GATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208256929|gb|GE051374.1|GE051374
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGGGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|120494083|gb|EH222250.1|EH222250
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208100282|gb|GD897990.1|GD897990
EST:     CGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208274814|gb|GE069706.1|GE069706
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|5752624|gb|AI959911.1|AI959911
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207771689|gb|GD744340.1|GD744340
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193575145|gb|FK530718.1|FK530718
EST:     GGCGGGAATTACGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|213606853|gb|DB961036.1|DB961036
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAA-CCATTGCAAA-GCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|254326748|gb|GR836357.1|GR836357
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208138879|gb|GD938541.1|GD938541
EST:     TGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: TGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207760242|gb|GD733229.1|GD733229
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208162969|gb|GD964331.1|GD964331
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193626483|gb|FK574387.1|FK574387
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192318966|gb|FK009046.1|FK009046
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAA-GCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193474378|gb|FK440809.1|FK440809
EST:     GGCGGGAATTATGGACATGATGAAG                         GATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193705194|gb|FK644404.1|FK644404
EST:     GGCGGGAATTATGGACATTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
genomic: GGCGGGAATTATGGACA-TGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|207842043|gb|GD813703.1|GD813703
EST:     AATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: AATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208197548|gb|GD999777.1|GD999777
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208265540|gb|GE062732.1|GE062732
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208068472|gb|GD862318.1|GD862318
EST:     CGGGAATTATGGTACATGATGAAG                         AATATGTATGAGGAT-GGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: CGGGAATTATGG-ACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208271425|gb|GE072631.1|GE072631
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207775241|gb|GD750242.1|GD750242
EST:     AATTATGGACGTGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: AATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|298184669|gb|HO029882.1|HO029882
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATG
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATG
EST: gi|7233032|gb|AW568383.1|AW568383
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193554342|gb|FK513443.1|FK513443
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|213617313|gb|DB978967.1|DB978967
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193635853|gb|FK580390.1|FK580390
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192329539|gb|FK021881.1|FK021881
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207683019|gb|GD665432.1|GD665432
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193556767|gb|FK516064.1|FK516064
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193325809|gb|FK290248.1|FK290248
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208221758|gb|GE018670.1|GE018670
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193328871|gb|FK293561.1|FK293561
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|151407955|gb|EV277770.1|EV277770
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207762501|gb|GD731654.1|GD731654
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|5753065|gb|AI960352.1|AI960352
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|209705506|gb|BW673527.1|BW673527
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208266880|gb|GE060959.1|GE060959
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193699067|gb|FK636260.1|FK636260
EST:     GGCGGGAATTACGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193396112|gb|FK361867.1|FK361867
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193382529|gb|FK347112.1|FK347112
EST:     GGCGGGAATTATGGACAATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGC-AAAGC
genomic: GGCGGGAATTATGGAC-ATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGC
EST: gi|5760822|gb|AI966185.1|AI966185
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGA
EST: gi|26059620|gb|CA802534.1|CA802534
EST:     ATCTGGACNAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATTAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|207726768|gb|GD702482.1|GD702482
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|15812718|gb|BI784993.1|BI784993
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58023697|gb|CX710438.1|CX710438
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208171425|gb|GD973222.1|GD973222
EST:     GGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|193524629|gb|FK481968.1|FK481968
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58024773|gb|CX711514.1|CX711514
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|254326747|gb|GR836356.1|GR836356
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|192318995|gb|FK009047.1|FK009047
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|208051115|gb|GD849012.1|GD849012
EST:     GGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: GGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
EST: gi|58023460|gb|CX710201.1|CX710201
EST:     ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG                         AATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA
genomic: ATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAGgtcagattct ... aatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtacccttgggaacattcaacttgacttttactatgcatgtaatattgcagAATATGTATGAGGATGGGGACGATGAGATGAAGAAAACCATTGCAAAAGCATGGACTGATGCTAGAACTGGGAAAACTGCTGACCCTTTAAGTAGCTACC
                       acttgac  putative branch site (score: 4)
                                         atgtaatatt  TA-rich tract