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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactatgcgaagattaaaatgacatctccccccccccccccaacccttgttaatcagcgtgataaagtagtaacttttgtgttggtgttacag

Basic information

species Glycine max
transcript GLYMA20G02270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G031607_T01 (Zea mays), 5'ss of exon 2
GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactatgcgaagattaaaatgacatctccccccccccccccaacccttgttaatcagcgtgat--aaagtagtaacttttgtgttggtgttacag--
 || ||||| ||||||||||| ||||| | || ||  ||  | ||  |  | |||||||| ||||| |||||| |||| ||||||||||| |||||||||||| | || | |  |   |     |  |          |      |        |  |||   || |  ||| |  |   | |||  |||   |    |  
TGATAAATGTAAGGTTGTGGTGAAGCCAACAAAGGTTATTGTTACCCTTTTCAAGGCTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtact-ctgtactcaccatgctgagctaatataattgtcttttttattttcaaatgttcaaattggtctaaattctttgatattggattgccctggatgtc

upper sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G324886_T01 (Zea mays), 5'ss of exon 3
GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagt-actatgcgaagattaaaatgacatctccccccccccccccaaccct---tgttaatcagcgtgataaagtagtaacttttgtgttggtgttacag
 |||||||| ||||||||||| || || |  ||||   |  | ||  |  | |||| ||| ||||| |||||| |||| ||||||||||| |||||||||||| | ||  | |  || | | |      |||    |        | | |||   || || |        |  |  | | | |||| |||   |    || 
TGAGAAATGTAAGGTTGTGGTGAAACCAACCAGGGTTGTTGTTACTCTTTTCAAGGGTTCTAAAGGCAACTGGTTAGACTTGCACTTCAAGGAAGACAAGgtactcaccttactgagctaatataattgtctagttcaaattgttctaacctctctgatattggattccctggatgactgatttttttgtcattagggca-

upper sequence: GLYMA20G02270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g03510.t01 (Vitis vinifera), 5'ss of exon 3
GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactatgcgaagattaaaatgacatc-tccccccccccccccaacccttgttaatcagcgtgataaagtagtaactt--ttgtgt-------tggtgttacag
 |||||||| ||||| ||  |||| |||| ||| | ||||||||||||| | || ||||| || || |||||| |||||||| | |||||||||||||||||| |  | |    ||||    || | ||| |    |  |      ||    ||| | |  || | | | |  || ||  |  | ||||       || | ||||||
TGAGAAATGTAAGGTGGTAATCAAACCTACAAGAGTAATCATCACATTGTTCAAAGCTTCTAAGGGGAACTGGTTAGATTTGAAGTTCAAAGAAGACAAGgtaattgtctatatagatagggattagatcatttagcttcagaagtaatttgtgtgattgtgcttaaaagaaaaggaaagtgatcgtgtgatttgatgatattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304722|gb|FG998766.1|FG998766
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|8827736|gb|BE211466.1|BE211466
EST:     TGAAGGCTTCCAAATGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAGATCTGGACGAAGAGAAAGACCCAATGGCGGGAAT
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAAT
EST: gi|18722904|gb|BM523426.1|BM523426
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGATTTTTAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|208055146|gb|GD853695.1|GD853695
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|298196142|gb|HO044533.1|HO044533
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGG
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGG
EST: gi|18040363|gb|BM308657.1|BM308657
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGGATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|208179964|gb|GD975367.1|GD975367
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|192304723|gb|FG998767.1|FG998767
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATTTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|8825966|gb|BE209696.1|BE209696
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCATAGAAGACAAG                         CTTAAGCCCAATCTGGACAAAGAGAAAGACCCAATGGCGGGAAT
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAAT
EST: gi|192327109|gb|FK015501.1|FK015501
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|193396074|gb|FK361829.1|FK361829
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|151411717|gb|EV281528.1|EV281528
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|120494083|gb|EH222250.1|EH222250
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|5752624|gb|AI959911.1|AI959911
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|213606853|gb|DB961036.1|DB961036
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|254326748|gb|GR836357.1|GR836357
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|208162969|gb|GD964331.1|GD964331
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|192318966|gb|FK009046.1|FK009046
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|298175712|gb|HO018309.1|HO018309
EST:     TGAAGGCTTCCAAAGGAAACTGGCTATATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCC
EST: gi|298184891|gb|HO030104.1|HO030104
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|298184669|gb|HO029882.1|HO029882
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|7233032|gb|AW568383.1|AW568383
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|193554342|gb|FK513443.1|FK513443
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|213617313|gb|DB978967.1|DB978967
EST:     GAAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: G-AAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|192329539|gb|FK021881.1|FK021881
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|151407955|gb|EV277770.1|EV277770
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|7233986|gb|AW569327.1|AW569327
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTAT
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTAT
EST: gi|5753065|gb|AI960352.1|AI960352
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|193396112|gb|FK361867.1|FK361867
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|5760822|gb|AI966185.1|AI966185
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|26059620|gb|CA802534.1|CA802534
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACNAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|207726768|gb|GD702482.1|GD702482
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|15812718|gb|BI784993.1|BI784993
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|58023697|gb|CX710438.1|CX710438
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|193524629|gb|FK481968.1|FK481968
EST:     GGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: GGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|58024773|gb|CX711514.1|CX711514
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|254326747|gb|GR836356.1|GR836356
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|192318995|gb|FK009047.1|FK009047
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: gi|58023460|gb|CX710201.1|CX710201
EST:     TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG                         CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAATGCAAGGTTGTGGTCAAGCCTAAAAGGGCAATCATCACATTGGTGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactatgcgaagattaaaatgacatctccccccccccccccaacccttgttaatcagcgtgataaagtagtaacttttgtgttggtgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG