1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagtactatgcgaagattaaaatgacatctccccccccccccccaacccttgttaatcagcgtgataaagtagtaacttttgtgttggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG
species | Glycine max |
transcript | GLYMA20G02270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|8827736|gb|BE211466.1|BE211466
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAATGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAGATCTGGACGAAGAGAAAGACCCAATGGCGGGAATEST: gi|18722904|gb|BM523426.1|BM523426
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAAT
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGATTTTTAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|208055146|gb|GD853695.1|GD853695
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|298196142|gb|HO044533.1|HO044533
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGEST: gi|18040363|gb|BM308657.1|BM308657
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGG
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGGATTATGGACEST: gi|208179964|gb|GD975367.1|GD975367
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|192304723|gb|FG998767.1|FG998767
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATTTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|8825966|gb|BE209696.1|BE209696
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCATAGAAGACAAG CTTAAGCCCAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATEST: gi|192327109|gb|FK015501.1|FK015501
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAAT
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|193396074|gb|FK361829.1|FK361829
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|151411717|gb|EV281528.1|EV281528
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|120494083|gb|EH222250.1|EH222250
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|5752624|gb|AI959911.1|AI959911
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|213606853|gb|DB961036.1|DB961036
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|254326748|gb|GR836357.1|GR836357
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|208162969|gb|GD964331.1|GD964331
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|192318966|gb|FK009046.1|FK009046
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|298175712|gb|HO018309.1|HO018309
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTATATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCEST: gi|298184891|gb|HO030104.1|HO030104
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|298184669|gb|HO029882.1|HO029882
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|7233032|gb|AW568383.1|AW568383
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|193554342|gb|FK513443.1|FK513443
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|213617313|gb|DB978967.1|DB978967
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: GAAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|192329539|gb|FK021881.1|FK021881
genomic: G-AAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|151407955|gb|EV277770.1|EV277770
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|7233986|gb|AW569327.1|AW569327
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATEST: gi|5753065|gb|AI960352.1|AI960352
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTAT
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|193396112|gb|FK361867.1|FK361867
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|5760822|gb|AI966185.1|AI966185
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|26059620|gb|CA802534.1|CA802534
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACNAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|207726768|gb|GD702482.1|GD702482
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|15812718|gb|BI784993.1|BI784993
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|58023697|gb|CX710438.1|CX710438
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|193524629|gb|FK481968.1|FK481968
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: GGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|58024773|gb|CX711514.1|CX711514
genomic: GGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|254326747|gb|GR836356.1|GR836356
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|192318995|gb|FK009047.1|FK009047
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACEST: gi|58023460|gb|CX710201.1|CX710201
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
EST: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAG CTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
genomic: TGAAGGCTTCCAAAGGAAACTGGCTAGATTTGCACTTCAAAGAAGACAAGgtagtactat ... ggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGAC
cccaacccttgttaatcagcgtgataaagtagtaacttttgtgttggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG
tagtaac putative branch site (score: 1)
ttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtactatgcgaagattaaaatgacatctccccccccccccccaacccttgttaatcagcgtgataaagtagtaacttttgtgttggtgttacagCTTAAGCCAAATCTGGACAAAGAGAAAGACCCAATGGCGGGAATTATGGACATGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA