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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGCGCTTGCCAAGTACACTCAGGGTTTCAGTGGTGCTGATATAACAGAGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGgtactgttctgggcacctttttctctgtattccatttaccaaggacatttgacaactataaaatttgttttaaaaattgaattaataaagattttgttctttaacaatctctcttggcag

Basic information

species Glycine max
transcript GLYMA19G36740.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208041472|gb|GD838652.1|GD838652
EST:     AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAAAGAGATAACC
genomic: AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACC
EST: gi|298167324|gb|HO010763.1|HO010763
EST:     AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
genomic: AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
EST: gi|58021701|gb|CX708442.1|CX708442
EST:     GAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
genomic: GAGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
EST: gi|207769729|gb|GD741301.1|GD741301
EST:     AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAA-GAGATAACCCTG
genomic: AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTG
EST: gi|207717640|gb|GD697742.1|GD697742
EST:     AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
genomic: AGATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
EST: gi|208192302|gb|GD993678.1|GD993678
EST:     GATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAGAAGAACATTGAGAAG                         GACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG
genomic: GATTTGCCAGCGCGCGTGCAAGTATGCCATTAGAG-AGAACATTGAGAAGgtactgttct ... ctcttggcagGACATTGAGAGAGAAAGGAGGAAAAGAGATAACCCTGAAGCAATGGAAGAG