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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgagcatttgaagctgggaagatattgatgctcttacgttgaatcacattgatgcacttgttttctttcttctgcttctggatttttatatttttatttatttattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATGTCACCTTCGAAGGGAGTTCTCTTTTATGGTCCTCCTGGTTGTGGTAAAA

Basic information

species Glycine max
transcript GLYMA19G36740.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696859|gb|FK638449.1|FK638449
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208308972|gb|GE104122.1|GE104122
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193517955|gb|FK476940.1|FK476940
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193407441|gb|FK371487.1|FK371487
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193332385|gb|FK298703.1|FK298703
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTACAATATCCAGT
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTT-CAATATCCAGT
EST: gi|208318210|gb|GE110229.1|GE110229
EST:     GGGAAGATATTGGTGGTTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAAATTTGAGAAGTTTGGAAT
genomic: GGGAAGATATTGGTGG-TCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAA-TTTGAGAAGTTTGGAAT
EST: gi|208137068|gb|GD935870.1|GD935870
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208110889|gb|GD908705.1|GD908705
EST:     GCTGGGAAGATATTGGTGGTCTTG-AAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208109626|gb|GD905300.1|GD905300
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208231485|gb|GE034416.1|GE034416
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193383411|gb|FK345412.1|FK345412
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttctttcttctgcttctggatttttatatttttatttatttattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATGTCACCTTCGAAGGGAGTTCTCTTTTATGGTCCTCCTGGTTGTGGTAAAA
                                           tttatttt  CT-rich tract
               tgcttctggattttta  TA-rich tract