1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtaccactcaatgataccaagctaggacttggggaaaaattcattggtttcaaaattttatgtctagacaactattattggctttttttggttatcagtcttcaactattttgccttggtttgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTGCTTACAGAAATGGATGGAATGTCGGCGAAGAAAACTGTGTTCA
species | Glycine max |
transcript | GLYMA19G36740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAG AGGGGTAGTAGTGTCGGAGATGCTGGTGGEST: gi|193365343|gb|FK329750.1|FK329750
genomic: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGgtttgtacca ... tgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGG
EST: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAG AGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACEST: gi|208092403|gb|GD888390.1|GD888390
genomic: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGgtttgtacca ... tgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAAC
EST: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAG AGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACEST: gi|208264479|gb|GE064935.1|GE064935
genomic: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGgtttgtacca ... tgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAAC
EST: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAG AGGGGTAGTAGTGTCGG
genomic: CTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGgtttgtacca ... tgtcttgcagAGGGGTAGTAGTGTCGG
attggctttttttggttatcagtcttcaactattttgccttggtttgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTGCTTACAGAAATGGATGGAATGTCGGCGAAGAAAACTGTGTTCA
tttgtctt CT-rich tract
aactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaccactcaatgataccaagctaggacttggggaaaaattcattggtttcaaaattttatgtctagacaactattattggctttttttggttatcagtcttcaactattttgccttggtttgtcttgcagAGGGGTAGTAGTGTCGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTGCTTACAGAAATGGATGGAATGTCGGCGAAGAAAACTGTGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA