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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgagcatttgaagctgggaagatattgatgctcttacgttgaatcacattgatgcacttgttttctttcttctgcttctggatttttatatttttatttatttattttgcag

Basic information

species Glycine max
transcript GLYMA19G36740.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696859|gb|FK638449.1|FK638449
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208308972|gb|GE104122.1|GE104122
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193517955|gb|FK476940.1|FK476940
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193407441|gb|FK371487.1|FK371487
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193332385|gb|FK298703.1|FK298703
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTACAATATCCAGT
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTT-CAATATCCAGT
EST: gi|208318210|gb|GE110229.1|GE110229
EST:     GGGAAGATATTGGTGGTTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAAATTTGAGAAGTTTGGAAT
genomic: GGGAAGATATTGGTGG-TCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAA-TTTGAGAAGTTTGGAAT
EST: gi|208137068|gb|GD935870.1|GD935870
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208110889|gb|GD908705.1|GD908705
EST:     GCTGGGAAGATATTGGTGGTCTTG-AAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208109626|gb|GD905300.1|GD905300
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|208231485|gb|GE034416.1|GE034416
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
EST: gi|193383411|gb|FK345412.1|FK345412
EST:     GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAG                         ACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG
genomic: GCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgag ... tattttgcagACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGgtaatttgagcatttgaagctgggaagatattgatgctcttacgttgaatcacattgatgcacttgttttctttcttctgcttctggatttttatatttttatttatttattttgcag

- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG