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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaactgcaactcttagtcttagattttcatcaatttccagttgcatcagtgacagattttgagagtcttatatggttttttgttctgatccag

Basic information

species Glycine max
transcript GLYMA19G36410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36410.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaactgca-actcttagtcttagattttcatcaatttccagttgcatcagtgacagattttgagagtcttatatggttttttgttctgatccag
|||||||| ||| | || || ||||| || |||||||||||||||| ||| || |||||||||||  ||||| |    | |||   |||| || | ||| | |  |     ||     |  ||  | | | | ||      || || |||||||   |     
GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAGgtaatttaagtttggaatctatttcttggactctcagccacataggtctgttcttgatacctaatataaaagc-----attgtcttttgtttacag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344182|gb|GR855267.1|GR855267
EST:     CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG                         CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|51342617|gb|CO983585.1|CO983585
EST:     CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG                         CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|254347019|gb|GR856689.1|GR856689
EST:     CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG                         CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|254329340|gb|GR833712.1|GR833712
EST:     CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG                         CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT