1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcacactttccttcattctttttcaaattcattactaaatgagcgaatttgtgccctaattcatgagaattttcgatttttttttcatctcccaaacatgtgtgacaatgtgtggaatcaattttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGATTGTTGGAGGAGGTTCCCA
species | Glycine max |
transcript | GLYMA19G36410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATCEST: gi|13312129|gb|BG405780.1|BG405780
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGEST: gi|254329339|gb|GR833711.1|GR833711
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGG
EST: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAG AAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATCGAGGCCTTACTTCAGgtcacacttt ... ttttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATC
tttttttttcatctcccaaacatgtgtgacaatgtgtggaatcaattttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGATTGTTGGAGGAGGTTCCCA
aatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacactttccttcattctttttcaaattcattactaaatgagcgaatttgtgccctaattcatgagaattttcgatttttttttcatctcccaaacatgtgtgacaatgtgtggaatcaattttgtgcagAAAGCAGAAACCGCTGACAAGGAGAAAAGTAAGGCATCCACTGTAGCGATCAATGCCGAGATTCGTCGAACCAAGGCTAGATTGTTGGAGGAGGTTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG