1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttttttaactgcaactcttagtcttagattttcatcaatttccagttgcatcagtgacagattttgagagtcttatatggttttttgttctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
species | Glycine max |
transcript | GLYMA19G36410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTEST: gi|51342617|gb|CO983585.1|CO983585
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTEST: gi|254347019|gb|GR856689.1|GR856689
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTEST: gi|254329340|gb|GR833712.1|GR833712
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG CTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGgttttttaac ... tctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
agttgcatcagtgacagattttgagagtcttatatggttttttgttctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
ttctgat putative branch site (score: 3)
ttttttgttct CT-rich tract
ttatatggtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttaactgcaactcttagtcttagattttcatcaatttccagttgcatcagtgacagattttgagagtcttatatggttttttgttctgatccagCTTCGATCCAGTCGGAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT