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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatttgtgaatttctgcctgcacccttgagccgaaaaacatggaaaggaaatcaaagttttcaaaactggaattagtaaagttaatagggaacggttttttgttgtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG

Basic information

species Glycine max
transcript GLYMA19G36410.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36410.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagatttgtgaatttctgcctgcacccttgagccgaaaaacatggaaaggaaatcaaagttttcaaaactggaattagtaaagttaatagggaacggttttttgttgtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG
                                    | | || |    |   |||    | ||       |||   |   ||    ||||  | |    ||| |     |  | |||||||||||| ||| | || || ||||| || |||||||||||||||| ||| || |||||||||
------------------------------------gtagaagacaccacccaaactccatttcctttctctgtgttggttagttgtaatctgaa---ctttctgaacttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344182|gb|GR855267.1|GR855267
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG                         GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
EST: gi|51342617|gb|CO983585.1|CO983585
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG                         GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
EST: gi|254347019|gb|GR856689.1|GR856689
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG                         GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
EST: gi|208262103|gb|GE058750.1|GE058750
EST:     GAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG                         GTGGACAGGGCATCTTCTGACCTTAAAAATA
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATA
EST: gi|254329340|gb|GR833712.1|GR833712
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG                         GTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGAC
EST: gi|254329339|gb|GR833711.1|GR833711
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG                         GTG-ACAGGGCATCTTCTGACCTTAAAA-TACCA
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAGgtgagatttg ... gtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaactggaattagtaaagttaatagggaacggttttttgttgtcgttacagGTGGACAGGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAG
                    agttaat  putative branch site (score: 4)
           aattagtaaagttaat  TA-rich tract