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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtatttgtctttctttctttttgtgtttattttcccacatttaagttcattatttatgtaccaaatacag

Basic information

species Glycine max
transcript GLYMA19G36410.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36410.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g48020.1 (Oryza sativa), 5'ss of exon 5
GATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtatttgtctttctttctttttgtgtt-tattttcccacatttaagttcattatttatgtaccaaatacag----------------
||| ||||||||||||| || |  |||||  |||| ||| ||||||||||||||  |||||||||||||||  |     || |||  ||    ||   |  |    |  | ||   | | |   |||  |  |  ||  |  |||||    ||                 
GATGAAGGTTTGGATATTATCGGTGAAGGGCTGGAAACTCTGAAAAACATGGCATCTGATATGAATGAGgttgg----ttgctgtgcttcatcttgagttatacaatactatacgatgcaatggttatatgaaacat--agttaccatgctcaatttttgtgatcatcag

upper sequence: GLYMA19G36410.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G057251_T01 (Zea mays), 5'ss of exon 5
GATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtatttgtctttctttctttttgtgtttattttcccacatttaagttcattatttatgtaccaaatacag-------
||| ||||||||||  | ||||  |||||| |||| ||||||||||||||||||  |||||||||||||||        || || | |||  ||| ||   |  |   |||| |     |     || |   | | | |   |  || | |         
GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAGgttg----tttgctgcacttgatttttttatatggtaattttagtaagttaaggacaactaactgactaactgagtaactgcgatcttcag

upper sequence: GLYMA19G36410.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 5
GATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcctgttgtatttgtctttctttctttttgtgtttattttcccacatttaagttcattat-ttatgtaccaaatacag
|| |||||||||||| |||| |||||||| ||||| || |||||||||||||| |||||||||||||||||  |  |    || | ||| | || || | ||||| | | ||||  |       | | |||||||  ||||| |     | |||
GACCAAGGTTTGGATGTGATAGCAGAAGGTTTGGACACATTGAAAAACATGGCCCATGATATGAATGAGgtttg-ctatcattttctttattttcctatgtttttttctgtatt--caagggccttaattcattacattatgaaatttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344182|gb|GR855267.1|GR855267
EST:     TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
genomic: TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
EST: gi|21601172|gb|BQ611503.1|BQ611503
EST:     TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAG
genomic: TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAG
EST: gi|51342617|gb|CO983585.1|CO983585
EST:     TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
genomic: TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
EST: gi|254347019|gb|GR856689.1|GR856689
EST:     TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
genomic: TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
EST: gi|208262103|gb|GE058750.1|GE058750
EST:     GGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGACGAGATTGATACTAAG
genomic: GGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
EST: gi|254329340|gb|GR833712.1|GR833712
EST:     TTTGAAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
genomic: TTTG-AAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
EST: gi|254329339|gb|GR833711.1|GR833711
EST:     TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG                         GAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG
genomic: TTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGgtcagattcc ... ccaaatacagGAACTGGATAGACAAGTTCCACTGATGGATGAGATCGATACTAAG