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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGgtataggatcctgaattacaacatccttttgccttcatccctttctactgcttcctttacaggattagcttttaccaaacgcttcccgtctctttgggaattgcacatatatggatttatttgaaattcattttattcctttctgtcatcctttaatcttaatcatgtctatatttcttgcag

Basic information

species Glycine max
transcript GLYMA19G17460.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGgtataggatcctgaattacaacatccttttgccttcatccctttctactgcttcctttacaggattagcttttaccaaacgcttcccgtctctttgggaattgcacatatatggatttatttgaaattcattttattcctttctgtcatcctttaatcttaatcatgtctatatttcttgcag
||||| ||  |||||||||||||| | |||| |||||  ||||| || ||||||||||| |||||||  |   ||    |   |     | |   |  ||  |    ||    || |   ||   |    ||  ||||| | |  | ||   || | |                                                                                          
TTGCACTGCTTGGAGAAAAATGGTCAGCAGATAACAAAGATGGTGTCCTATTGTGCTTATCACAGgtgaaatttctcagaactctg---cttaaagaatttttggtgttacgatgttggtttatgatttataagttttatctattgtttttggtgtgtag----------------------------------------------------------------------------------------

upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 16
TTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGgtataggatcctgaattacaacatccttttgccttcatccctttctactgcttcctttacaggattagcttttaccaaacgcttcccgtctctttgggaattgcacatatatggatttatttgaaattcattttattcctttctgtcatcctttaatcttaatcatgtctatatttct--tgcag
|||||  |  ||| ||||||||| | ||||| |||||  |||||||| ||||||||||| ||||||||| | ||||| |  |     |           |       |   |||    | |  ||| |          |  | || ||  |    |   || ||   |  ||| |   |||| |  |  |  |  | || |||    |  | |||      |  |  |||||  | | |||||  |||||
TTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAGgtattgaatccttacatgtgtgagtgagaaaatatagctttctcacactcacacgtgcacatg-------cacatgacaccctaacatgttggatgtgatgggttcatgtgctgattcaactctaccttgtgtttttcacaacc-taatcaagattttctgttcatggttttgtttctggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996740|gb|CF808329.1|CF808329
EST:     AAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAG                         AGCTCCCAATCCAGACACTGTTTTAATTATGCAAACCCCTCTTGGGGTCAT
genomic: AAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGgtataggatc ... tttcttgcagAGCTCCCAATCCAGACACTGTTTCAATTATGCAAACCCCTCTTGGGGTCAT
EST: gi|9204647|gb|BE330871.1|BE330871
EST:     AAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAG                         AGCTCCCAATCCAGACACTGTTTCAATTATGCAAACCCCTCTTGGGGTCAT
genomic: AAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGgtataggatc ... tttcttgcagAGCTCCCAATCCAGACACTGTTTCAATTATGCAAACCCCTCTTGGGGTCAT