Sequence
atgc intronic sequence ATGC exonic sequenceTACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttaccaccttttcttgtctgtttcaataatgtacttaatatctttcttttaaaagaaaaatatagcacatcactatcactttatggt...
Basic information
species | Glycine max |
transcript | GLYMA19G17460.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 13
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttaccaccttttcttgtctgtttcaataatgtacttaatatctttcttttaaaagaaaaatatagcacatcactatcacttt-atggt------
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GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAAAATGGAACCTGCAGTTGGGATTTTGAGTATTCCATCAACTAATTTTGTGAAGgtaaa---tttaatattaacttattgtctttaattttggacctttccataactgtctgcgaccaaagctaaattgcatgaaatcttcttcgttttgatggatttcag
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttac---caccttttcttgtctgtttcaataatgtacttaatatct----ttcttttaaaagaaaaatatagcacatcactatcactttatggt-----------------------------------------
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GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 14
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggtt-accaccttttcttgtctgtttcaataatgtacttaat-atctttcttttaaaagaaaaatatagcacatcactatcactttatggt
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CACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGAGCCTGCTGTTGGCATCTTGAGCATTCCATCAAATTCTTTTATAAAGgtaaagcaactgttttagctgctagtcacaactgcttcacacgtgttcttattcatctgctttgtaggggaaaatcttggcatgtttctccccattcttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37996740|gb|CF808329.1|CF808329EST: TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAG ATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG
genomic: TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttt ... tgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttaccaccttttcttgtctgtttcaataatgtacttaatatctttcttttaaaagaaaaatatagcacatcactatcactttatggt
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