Sequence
atgc intronic sequence ATGC exonic sequenceAGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggtatcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt...
Basic information
species | Glycine max |
transcript | GLYMA19G17460.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 19
AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatg-aatgtcatattcaaatacgaaaa--gattacaaagattcatggtatct----tggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt
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AGGACAGAAATGGAACGGGTCTGCTTTGGTCGATCTGGTATACATGGATGGGGCCTTTTTGCGAGAAGAAATATTCAAGAAGGAGAAATGgtaagcagagccatcagaacatacttcttccaagaaagaaaatctacggcatttcctctgttgtgttgacgaatattgaaatgt---aatttctttccag-------
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 20
AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggta----tcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt---
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AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgta-------catactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ34404 (Selaginella moellendorffii), 5'ss of exon 12
AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggtatcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt
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AAAACTGAGAAAACGAGAGTTTGCTTTGGTAAATCAGGCATCCATGGATGGGGACTGTTTGCGAGGCGATACATCAAAGAAGGAGAGATGgta-aatcatcgccct-gcgtac-----tattacttcgagt--tgattgctaaatgtcgttcgcgatgccag----------------------------
upper sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ23651 (Selaginella moellendorffii), 5'ss of exon 11
AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggtatcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt
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AAAACTGAGAAAACGAGAGTTTGCTTTGGTAAATCAGGCATCCATGGATGGGGACTCTTTGCGAGGCGATACATCAAAGAAGGAGAGATGgta-aatcatcgccct-gcgtac-----tattacttcgagt--tgattgctaaatgtcgttcgggatgccag----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9204647|gb|BE330871.1|BE330871EST: TACATGGATGGGGCCTCTCTGCACGTCAAAATATTCAAGAAGGGGAAATG GTTCTTGAATATTGCGGTGAACTAGTG
genomic: TACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgt ... tcccaagcagGTTCTTGAATATCGTGGTGAACAAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggtatcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt
- - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG