Sequence
atgc intronic sequence ATGC exonic sequence...aaagctgataagtatttctgatttgataatttctctcggtgaatctcagtccggttgtacatgccaatgtaatttaaagtctgctataattgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
Basic information
species | Glycine max |
transcript | GLYMA19G17460.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 3'ss of exon 13
-----aaagctgataagtatttctgattt-----gataatttctctcggtgaatctcagtccgg-ttgtacatgccaatgtaatt------------taaagtctgctataattga--atttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
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gtagtataattggatgatatattaagtgtcttaagaagattaatcttgaacaatattaaaatgtcttgtatattgaagttgaactacaaaactctaattatgcttattctcatccattgctccagATGTGTGTCATTTGTAGGCAAATACATGGTTCGTGTACACAGTGCTACAGGTGCTCAACTTATTACCATGCCATCTGTGCATCAAGGGCAGGCTATAGGA
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G170412_T01 (Zea mays), 3'ss of exon 13
aaagctgataagtatttctgatttg-----ataatttctctcg-----gtgaatct-cagtccggttgtacatgccaatgt-----------aatttaaagtctgctataattgaattt--cagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
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---gttgtttatctttcgtagtttcgtactataatttatgttgctcaagtggattgaccaacaagtaatacatttctgtgctgaagtatggcagtctatgctctatgctcatctatctctgcagATGTGTGTGATTTGTAAGCAAATACATGGTTCATGTACTCAATGCTACAGGTGCTCTACTTACTACCATGCCATTTGTGCATCAAGGGCAGGCTATCGAA
upper sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 14
aaagctgataagtatt--tctgatttgataatttctctcggtgaatctcagtccggttgtacatgccaatgtaatttaaagtctgctataatt----gaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
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----tttgaaaatgttagcatgatgtttaatattgagttggttttcttgcacatgaatcttca-gctgatgtgatctga-gtttgccttgttttcatgaaattcagATTTGCGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37996740|gb|CF808329.1|CF808329EST: TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAG ATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG
genomic: TGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttt ... tgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcagtccggttgtacatgccaatgtaatttaaagtctgctataattgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
aatgtaatttaaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagctgataagtatttctgatttgataatttctctcggtgaatctcagtccggttgtacatgccaatgtaatttaaagtctgctataattgaatttcagATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGA
- -gctgata
- - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - ggttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtctgc