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...taacttataatttgaagacctaaaaataaataaaattttaataaaagattaaaacaaaaaagccatattttatatgagcctctggttttcatctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCCCTCGCAGGGCCATGTTCGCTGCTGCTTCAAGTGTTCTCACATTTTGGA
species | Glycine max |
transcript | GLYMA19G13070.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAG GTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCEST: gi|58016158|gb|CX702900.1|CX702900
genomic: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAGgtattctcta ... atctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCC
EST: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAG GTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCEST: gi|31306041|gb|CD391244.1|CD391244
genomic: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAGgtattctcta ... atctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCC
EST: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAG GTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCEST: gi|192321957|gb|FK012509.1|FK012509
genomic: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAGgtattctcta ... atctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCC
EST: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAG GTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCC
genomic: GATCTGGAAGCGGAACCATGCAAGTTTGGAGTATTGAGACCAAAAATGAGgtattctcta ... atctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCC
agattaaaacaaaaaagccatattttatatgagcctctggttttcatctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCCCTCGCAGGGCCATGTTCGCTGCTGCTTCAAGTGTTCTCACATTTTGGA
ttttcatctct CT-rich tract
atattttatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttataatttgaagacctaaaaataaataaaattttaataaaagattaaaacaaaaaagccatattttatatgagcctctggttttcatctctgcagGTGGCATGTTGGACCAGCCATATTGGTGTGCCTTCGTGCTTGAAGTGGGCCCCTCGCAGGGCCATGTTCGCTGCTGCTTCAAGTGTTCTCACATTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcca