1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttgacttctttatatgacaattttattttacagctaatcagtggttactggctacatattatgattgcaattattcacttcttattccttgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG
species | Glycine max |
transcript | GLYMA19G13070.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAG AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAEST: gi|58015238|gb|CX701980.1|CX701980
genomic: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAGgttgacttct ... tgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCA
EST: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAG AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAEST: gi|58016158|gb|CX702900.1|CX702900
genomic: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAGgttgacttct ... tgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCA
EST: AAAGTACACTTTGGAGTCTACTGGAG AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAEST: gi|298184550|gb|HO029763.1|HO029763
genomic: AAAGTACACTTTGGAGTCTACTGGAGgttgacttct ... tgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCA
EST: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAG AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCA
genomic: TCCAAGCTCTGTTATATGCTCTTCAAAGTACACTTTGGAGTCTACTGGAGgttgacttct ... tgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCA
ttactggctacatattatgattgcaattattcacttcttattccttgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG
ttcacttcttattcct CT-rich tract
tacatattatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgacttctttatatgacaattttattttacagctaatcagtggttactggctacatattatgattgcaattattcacttcttattccttgtgtgccagAATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT