1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttggatgcatttttttcatatatgaatttttttccctgcggaaggaaaactaggtgctttttcctagttgctatttgccttaggcaaaaaata...
species | Glycine max |
transcript | GLYMA19G13070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG AGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCEST: gi|58015238|gb|CX701980.1|CX701980
genomic: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttg ... tgctttgcagAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTC
EST: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG AGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCEST: gi|58016158|gb|CX702900.1|CX702900
genomic: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttg ... tgctttgcagAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTC
EST: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG AGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCEST: gi|298184550|gb|HO029763.1|HO029763
genomic: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttg ... tgctttgcagAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTC
EST: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAG AGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTC
genomic: TCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttg ... tgctttgcagAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCATTGCGGTATTTATCAATGTATGATAATCGCTGCTTACGATACTTCAAAGGGCATAAACAGAGgttagatttggatgcatttttttcatatatgaatttttttccctgcggaaggaaaactaggtgctttttcctagttgctatttgccttaggcaaaaaata
- - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaaa