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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttgtaacctttctctagcctttgctatgcttttcataacttcacaacactgacattgcccatattggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGCAAATCAATGCTTCTGACTACTACTAATA

Basic information

species Glycine max
transcript GLYMA19G13070.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G13070.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g46570.1 (Oryza sativa), 3'ss of exon 5
gtttgtatttgt----aaccttt----ctctagcctttgctatgcttttcataacttcacaacactgacattgcccatattggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGCAAATCAATGCTTCTGACTACTACTAATA
||| |||||       || ||      || ||   |    || |  || |  || |||  | |   |         | | |  |  |||||||||||||||| ||  | |||||||| || ||||| ||||||| ||| |||||||| || ||||| ||||| || |||||| |||| || || || |
gttggtattcagcttgaatctcaaaaactgtaaattcctataaggcttgcggaagttcttatcttgggtgccaaatacaat--ttcagGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321958|gb|FK012510.1|FK012510
EST:     CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAG                         GGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
genomic: CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAGgtttgtattt ... attggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
EST: gi|58015238|gb|CX701980.1|CX701980
EST:     CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAG                         GGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
genomic: CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAGgtttgtattt ... attggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
EST: gi|58016158|gb|CX702900.1|CX702900
EST:     CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAG                         GGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
genomic: CAATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAGgtttgtattt ... attggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
EST: gi|192321957|gb|FK012509.1|FK012509
EST:     AATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAG                         GGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT
genomic: AATGGAAGGGGGAGCTATTAAATTATTTGATTCTCGTTCTTATGACAAGgtttgtattt ... attggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttgctatgcttttcataacttcacaacactgacattgcccatattggtgtagGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGCAAATCAATGCTTCTGACTACTACTAATA
                             cactgac  putative branch site (score: 2)
            ttttcataa  TA-rich tract