1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatttctttgataattgaatcctttgcattacattttccatatgcagtaatgtatttgttcaaaatatgcggaaattgatagttttctaacttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCCAGATGGGAAGTACATGGTGGCAG
species | Glycine max |
transcript | GLYMA19G13070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAG CGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACAEST: gi|58016158|gb|CX702900.1|CX702900
genomic: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAGgtaaatttct ... acttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACA
EST: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAG CGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACAEST: gi|31306041|gb|CD391244.1|CD391244
genomic: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAGgtaaatttct ... acttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACA
EST: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAG CGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACAEST: gi|192321957|gb|FK012509.1|FK012509
genomic: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAGgtaaatttct ... acttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACA
EST: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAG CGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACA
genomic: CTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGAGAAGgtaaatttct ... acttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACA
cagtaatgtatttgttcaaaatatgcggaaattgatagttttctaacttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCCAGATGGGAAGTACATGGTGGCAG
ttctaac putative branch site (score: 1)
tatttgttcaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttctttgataattgaatcctttgcattacattttccatatgcagtaatgtatttgttcaaaatatgcggaaattgatagttttctaacttgtgcagCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCCAGATGGGAAGTACATGGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG