1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaatgaatgttgtattgatataatgaaataaaatcatctttcctaaatctagtcatagaaaggaagtgtggagtattttaaaatctttgtgtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGACAATAAGAGGGAAACCAAAATCTGTGTTAGGAGGAGATCTGATAATTA
species | Glycine max |
transcript | GLYMA18G47830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGEST: gi|298178050|gb|HO027433.1|HO027433
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGG
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCEST: gi|23064371|gb|BU579144.1|BU579144
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACC
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCATTGTTTTAAGTATCAAGTGGEST: gi|27424221|gb|CA935741.1|CA935741
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGG
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGEST: gi|17519197|gb|BM188239.1|BM188239
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGG
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGEST: gi|213591288|gb|DB955692.1|DB955692
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGG
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGEST: gi|213597665|gb|DB964458.1|DB964458
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGG
EST: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG ACTGTGCAGGAAATGGTGATGCTGTCAAACAGTGTTTTAAGTATNCA-GTG
genomic: AGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTGgtgagttcaa ... gtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTAT-CAAGTG
aatctagtcatagaaaggaagtgtggagtattttaaaatctttgtgtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGACAATAAGAGGGAAACCAAAATCTGTGTTAGGAGGAGATCTGATAATTA
tcctaaa putative branch site (score: 2)
agtattttaaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgaatgttgtattgatataatgaaataaaatcatctttcctaaatctagtcatagaaaggaagtgtggagtattttaaaatctttgtgtggtgacagACTGTGCAGGAAATGGTGATGCTGTCAACCAGTGTTTTAAGTATCAAGTGGACAATAAGAGGGAAACCAAAATCTGTGTTAGGAGGAGATCTGATAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- -tgaatgt
- - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgtg