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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTAGAATCCACTGCAAGACAACTTGCACGAGATATACTTGAGCTAAGGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgctttaattctccttagcacactacatgttctatttatgacatgctcatcatgaaaataacatgattcatttcttatagtggtggtacccttttg...

Basic information

species Glycine max
transcript GLYMA18G47830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306216|gb|FG995052.1|FG995052
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|5753386|gb|AI960673.1|AI960673
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|298178050|gb|HO027433.1|HO027433
EST:     GGGAGGGAAATCGAGTACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|23064371|gb|BU579144.1|BU579144
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|17519197|gb|BM188239.1|BM188239
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|213591288|gb|DB955692.1|DB955692
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|213597665|gb|DB964458.1|DB964458
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: gi|213606397|gb|DB962990.1|DB962990
EST:     GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG                         GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGAC
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGTAGAATCCACTGCAAGACAACTTGCACGAGATATACTTGAGCTAAGGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgctttaattctccttagcacactacatgttctatttatgacatgctcatcatgaaaataacatgattcatttcttatagtggtggtacccttttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgg