1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcttttggattgatctcatagtttagttattccaataaatattttctatctctgccactctttttatgttatgtctatgatattgttaccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG
species | Glycine max |
transcript | GLYMA18G47830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|5753386|gb|AI960673.1|AI960673
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|298178050|gb|HO027433.1|HO027433
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGTACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|23064371|gb|BU579144.1|BU579144
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|17519197|gb|BM188239.1|BM188239
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|213591288|gb|DB955692.1|DB955692
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|213597665|gb|DB964458.1|DB964458
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGEST: gi|213606397|gb|DB962990.1|DB962990
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGG
EST: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAG GATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGAC
genomic: GGGAGGGAAATCGAGCACTTGGAATCTTTGCTGTTTCTGTCGCATACAAGgtcttgcttt ... ccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGAC
ttctatctctgccactctttttatgttatgtctatgatattgttaccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG
tctttttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttttggattgatctcatagtttagttattccaataaatattttctatctctgccactctttttatgttatgtctatgatattgttaccacgttcagGATCCTATTAGGAGCTTTACCGGTCGTGAAAAGTATAAAAGACGACTATGGGCAACCGGTGCACTAGACAACCCATCTGTG
- gcttttg
- - - - - - - - - - - - - - - - -ccaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg