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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGGAATAAATGCACCACCAGCAAGATTTTTCATTCCTCTTCCACGTGCATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattacttctcttcatattcatatacacaacaacaattcaacgtcaatcataaacataactagttagtggcatgccatgttttttcttcttatcta...

Basic information

species Glycine max
transcript GLYMA18G47830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306216|gb|FG995052.1|FG995052
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|5753386|gb|AI960673.1|AI960673
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|298178050|gb|HO027433.1|HO027433
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|213588905|gb|DB969552.1|DB969552
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|17519197|gb|BM188239.1|BM188239
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|213591288|gb|DB955692.1|DB955692
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|213597665|gb|DB964458.1|DB964458
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: gi|213606397|gb|DB962990.1|DB962990
EST:     CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG                         TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA