1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctcctattttcttccattgtaggtgctaacagagtagtttatccaattagggtctttgtatatatgttatgttatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGACATCGTATTCAGAAGCCGATAAGATGGTTGATGGTATGGACTTTGGTGA
species | Glycine max |
transcript | GLYMA18G47830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|5753386|gb|AI960673.1|AI960673
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|298178050|gb|HO027433.1|HO027433
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|213588905|gb|DB969552.1|DB969552
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|17519197|gb|BM188239.1|BM188239
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|213591288|gb|DB955692.1|DB955692
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|213597665|gb|DB964458.1|DB964458
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGAEST: gi|213606397|gb|DB962990.1|DB962990
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
EST: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAG TTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
genomic: CATGCCCTCTTTCTTGCATGATCATCACTACCACTCTTTCTTATTGCGAGgtttcattac ... tgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGA
aattagggtctttgtatatatgttatgttatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGACATCGTATTCAGAAGCCGATAAGATGGTTGATGGTATGGACTTTGGTGA
tatatatgttatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcctattttcttccattgtaggtgctaacagagtagtttatccaattagggtctttgtatatatgttatgttatgttatgtattaagatgttttgcagTTGCCAATGATGCTGATAGAAGTGAAGTGTCATCTGATACTGCAATCAAGACATCGTATTCAGAAGCCGATAAGATGGTTGATGGTATGGACTTTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -ttcttcc
- - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg