1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attagctagtgtcatgatgtccaaagcatgtttgctggattggttcctttcccttttctttgttagaggactgaaacattatttttttattgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCT
species | Glycine max |
transcript | GLYMA18G47790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCT GATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTEST: gi|192321175|gb|FK013593.1|FK013593
genomic: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTggtataatcc ... tgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACT
EST: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCT GATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTEST: gi|14195895|gb|BE819889.2|BE819889
genomic: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTggtataatcc ... tgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGT
EST: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCT GATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACT
genomic: GAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTggtataatcc ... tgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACT
cctttcccttttctttgttagaggactgaaacattatttttttattgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCT
tttttttatt CT-rich tract
actgaaacattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagctagtgtcatgatgtccaaagcatgtttgctggattggttcctttcccttttctttgttagaggactgaaacattatttttttattgggtacacaGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - gctagtg
- - - - - - - tgatgtc
- - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgaa