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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGgttcttcttcacctttcttcttctgtttgtcaccaaacccccacgcgtgtgttacaattacgatgttgttgttgtttctcacggatacgatgttgtgttgttgggctctagtttgtgttttgtagttgataaatgatcctaccctgtgtgtgaaaccaaactag

Basic information

species Glycine max
transcript GLYMA18G47790.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47790.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 1
CAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGgttcttcttcacctttcttcttctgtttgtcaccaaacccccacgcgtgtgttacaattacgatgttgttgttgtttctcacggatacgatgttgtgttgttgggctctagtttgtgttttgtagttgataaatgatcctaccctgtgtgtgaaaccaaactag
  |||||||||||||  | ||| | |||||||| || || |||||||||||||||||||| || ||||||||||  |  || |||||||||||  || |||||   | ||   |||||   ||||| | ||       |     |  ||||||        | |  | || ||| |||      || |    | |  ||||   | |||||                                                     
GGAGGCCGCCGGCGAGTTGTGCAGAGGCGCCACTGCTTATCTCAACATGGAGCCCGGCGATTGTCACGGTGACCGTACGGCGGTCTCTGCTCTTGTCAAGgtttggcctcgagtttctc--tctgtctctcttt---tctttttgaatgtgtt-------tgtttgtttttttgattcctttcaattcttcatcgcattgtgcagttctagc----------------------------------------------------