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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGgtgagatcagaattctattcattttccctttcttgaatgagttatggcaaaaaattgcattgcgttggtgtttttatttgtctttttaccttcctttttctgctgcag

Basic information

species Glycine max
transcript GLYMA18G47790.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47790.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G47390.2 (Arabidopsis thaliana), 5'ss of exon 6
GATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGgtgagatcagaattctattcattttccctttcttgaatgagttatggcaaaaaattgcattgcgttggtgtttttatttgtctttttaccttcctttttctgctgcag
||||| | ||||  |||||||||||| ||||| |||||||||  |||||||  ||  || ||||| || || |||||||||||||| ||||| |||||||||        || | | ||||   ||| ||||    ||  ||| ||    | |  ||  ||  | |   |||||| ||||| | || |                    
GATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGAGCTTGTTCTCGAGTTCCGTTCTCTGTTCTTAAGTATGCCATGACTCTTGATGgt--------aactat-ttcaacctccatttc----atatgtt-tgtaggatagctgtttta-gctaacgttttt-tttgtttattgatag-----------------

upper sequence: GLYMA18G47790.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 3
GATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGgtgaga-tcagaattctattca----ttttccctttcttgaatgagttatggcaaaaaattgcattgcgttggtgtttttatttgtctttttaccttcctttttctgctgcag------------------------------------------------------------------------------------
|| ||    |||  ||| ||  | |||||||| |||||||| | |||||||||||  || ||||||||||| ||||| |||||||||||||||||||||||||||  | |  | | || | |    ||| |||| |  |   |   |         || ||  | |   ||  | ||| | |     || || | ||  ||||  || |                                                                                        
GAAGCTTTAAAATCGTGCCTCATCGTCAATGCTCCTTTGATATATAGAGCTGCTTCTCGAGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGgtgagggttatgaatttaataaaatttttaccctcttctctctctctctctctcttaatttttaatttttttttatttct-tccaatttctttctttttttttaatggtaatcttaacctccaattaattaaagaggacttcaaaatttgaaataaacagtagtttattctctgatggtcttctttggttctaacag