1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agacaaattccaattagaattattttggcttatttggctttatcttattttgattttatttttatgatatgttggataacggtgatatttatgcccttcaGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTA
species | Glycine max |
transcript | GLYMA18G47790.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAA GGTTTATGCTTTTGTTGCTCCCTAAA-TTATTGGTGGGAAAGAATGCACCTEST: gi|192321175|gb|FK013593.1|FK013593
genomic: TGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAggtgttgttc ... atgcccttcaGGTTTATGCTTTTGTTGCTCC-TAAAATTATTGGTGG-AAAGAATGCACCT
EST: TGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAA GGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTC
genomic: TGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAggtgttgttc ... atgcccttcaGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTC
tattttgattttatttttatgatatgttggataacggtgatatttatgcccttcaGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTA
ggataac putative branch site (score: 3)
tgcccttc putative PPT
attttatttttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacaaattccaattagaattattttggcttatttggctttatcttattttgattttatttttatgatatgttggataacggtgatatttatgcccttcaGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg