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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgattttttgcattaattatataatctgtttacgtttgttgttttattgcattgcttatagataatatttcatgtgta

Basic information

species Glycine max
transcript GLYMA18G47790.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47790.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G090068_T01 (Zea mays), 5'ss of exon 7
ATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgattt-tttgcattaattatataatctgtttacgttt------gttgttttattgcattgcttatagataatatttcatgtgta-----------------------------------------------------------
 |  || ||| || || ||||| || ||||||||| | ||||||||||||||||||||||| |||||| | || |||   |  || || || || ||||||||   |  | | || | | ||  | |  |||   ||   | |       ||  || |||   |  |     | ||  | || ||| | |                                                            
-TATTTTTGGGGCTTTCTCAAACTTTTCTCCTCATTCAATTCAAATGCCTGATGAAAATGGAGATTATTTCACATGGCCAACAGTGGAACACTATTACCAGgtttgtcttctattcgtactacatgtgaaattccttgttgctatggaaagtgattctataataacgtgccaacatg-tgttccatttttttataaccatgtaacatcatcatttggactgtatataggctcataactattttccttcag

upper sequence: GLYMA18G47790.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 7
ATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgatttt-ttgcattaattatataatctgtttacgtttgttgttttattgcattgcttatagataatatttcatgtgta-
 || |||||| || |||||||| ||||||||||| || || |||||||||||||||||||||||||||  ||| |||   || || |||||||| ||||||||   |  ||||  ||||| ||||||||    | ||   | |     |||  ||    |   |  |   | | |  ||  || | 
-TCTTTATGGAGCTTTTTCAAACTTCTCTCCTCACCCTATACAAATGCCTGATGAAAATGGTGATTATCAGACCTGGTCAAGCGTAGAGCATTATTACCAGgttactacttttgctgcataaattatat----tattcttgctgcaactttggttaagatatgtcaaagcattctcccaactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321174|gb|FK013592.1|FK013592
EST:     GATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCA                         GGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGA
genomic: GATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgat ... ttcatgtgtaGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGA
EST: gi|192321175|gb|FK013593.1|FK013593
EST:     GATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCA                         GGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGA
genomic: GATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgat ... ttcatgtgtaGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGA
EST: gi|14195895|gb|BE819889.2|BE819889
EST:     GATGAAAATGGTGATTATGTGACNNNNNTGAGTGTCGAGCATTACTACCA                         GGCTCACAAGTTTATTGGGGTNNATGATCCTTTGGCACAAGATTGTGTTGA
genomic: GATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAggtacttgat ... ttcatgtgtaGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGA