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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttgaaaccctatcagatttatccatttagctggtcaagcaatatatctcgtacaagagatcatggcattttcctttctgttatctattttgttttgggtcctcagGTGCGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAAGCATCAAACGATTCAGATAAACTGTCTCCAAGATTTTTAGGCTATTTTCTTTTTCGTTCTA

Basic information

species Glycine max
transcript GLYMA18G47050.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 17
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 17
gtaatgttttgaaaccctatcagatttatccatttagctggtcaagcaatatatctcgtacaagagatcatggcattttcctttctgttatctattttgttttgggtcctcagGTGCGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAAGCATCAAACGATTCAGATAAACTGTCTCCAAGATTTTTAGGCTATTTTCTTTTTCGTTCTA
         |    || | |   || |  |||  | |  |  | |    | ||  | ||  | || ||  |    |  | ||      |    |||||||||  |||  ||||||  |||||||||| ||||| || ||||||||||| || |||||||  |||||||| ||||| || || |||||||| |||||||||||||| |||||||
--------attgggccttgttgaatgtgaccaacttgtggccctact--tttagttagttaatgaaattttaat-tgcttctggagaatgataattttgttt--ggttatcagGTAAGGTTCTTGCTGAGATCCGGAAGGGAATATGAACAGGCATCAACAGATTCAGACAAACTCTCCCCCAGATTTTTGGGCTATTTTCTTTTCCGTTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaagagatcatggcattttcctttctgttatctattttgttttgggtcctcagGTGCGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAAGCATCAAACGATTCAGATAAACTGTCTCCAAGATTTTTAGGCTATTTTCTTTTTCGTTCTA
                                                tcctc  CT-rich tract
                             ttatctattttgtttt  TA-rich tract