Sequence
atgc intronic sequence ATGC exonic sequence...cattttttctggtgtgattgttgtattatatatgctttagggctttagggttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
Basic information
species | Glycine max |
transcript | GLYMA18G47050.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 3'ss of exon 14
--------------------------------------------catttttt-ctggtgtgattgttgtattatatatgctttagggctttagggttttaggcttgattaacaaaatttaatcaatttc-------ac-----ctgaaa----------tataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
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gtacggtaaactcttctagagacgttaaatactataaagtccagtatttattgcttgcatgaacagacaatttcttcatctattaagtttgataaacctagttatatgcaacagagggtcatcaatacctgcaagaactattgctgaaaatggctttgctattacagGTCATTGCGAAGCTGGAAGGCCCTGCTGTCAGTCAGTACTGTGCACTCCGTTTGCTACAA
upper sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 15
cattttttctggtgtgattgttgtattatata--tgctttagggctttaggg-----ttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
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----tcttgggacaaaaaaagcgcatggagttactattatagaacactgaagaaatctattaggttatgtttcaaatcgtacactaagtata---gaaatggtgcagGTGATTGCAAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCTTTACGGCTATTGCAG
upper sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 15
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 15
cattttttctggtgtgattgttgtattatata--tgctttagggctttaggg-----ttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
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----ctctcgggacaaaaaagcgcatggagttactattatagaacactgaagaaatctattaggttatgtttcaaatcgtacactaagtata---gaaatggtgcagGTGATTGCCAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAG
upper sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 15
cattttttctggtgtgattgttgtattatatatgctttagggctttagg--gttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
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--ttgcttagggagttccaaataaaatgtatattatacaaatgaccaacctatattgaattgtaatgcatatattctttctgttccatgtgtaatgccgcagGTGATTGCTAAACTTGAGGGCCCTGCCGTGAGTCAGTATTGTGCTTTACGTTTATTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagggttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
ttgattaacaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattttttctggtgtgattgttgtattatatatgctttagggctttagggttttaggcttgattaacaaaatttaatcaatttcacctgaaatataacagGTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -tggtgtg
- - - - - - - - - tgttgta
- - - - - - - - - - - - - - tatatgc
- - - - - - - - - - - - - - - - - - - - - - - -gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa