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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTTGAACTATTTTGGGTCACCTGTGGTCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaaactgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttgattcaccctcaagtgtatttgctttttacttgtctggtatttttttttttttacatggatgttcattattgcag

Basic information

species Glycine max
transcript GLYMA18G47050.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGTCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa-------actgttaaggtctttcttat--tcactgtatgtacatccctgaactttactaggtttatgactcttgattcaccctcaagtgtatttgcttt----ttacttgtctggtatttttttttttttacatggatgttcattattgcag-------------------------------------
 |||||||||||||||||||| || |||||||| || || || || |||||| |  | |||||||| || ||| |||||||||| || ||||| ||||||||||        ||   ||| |  || ||||  ||||| |   |      ||    |||  |   ||| |   | ||  ||   |      |    ||||  |     ||  ||||||  | |   | | | ||  ||   |||   || |  |                                       
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag

upper sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G28350.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGTCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa-------actgttaaggtctttcttat--tcactgta--tgtacatccctgaactttactaggtttatgactcttgattca-----------ccctcaagtgtat-----ttgctttttacttg---tctggtatttttttttttttacatg----------gatgttcattattgcag
 |||||||||||||||||||| || |||||||| || ||||| || |||||| |  | ||||||||||| ||| |||||||||| || ||||| ||||||||||        ||   ||| |  || ||||  ||||| |   | | | ||  |    |||  |   ||| |   ||| | |  |           |||  |||||| |     |  || | || |||    |||   ||||| ||||||||  ||          ||  |||  ||||||||
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAGGAGAAGACAAATCTTGTCGAGGAAGTTTCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttctttttttttttttttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctatttgatccctgtcttttttatttttttatttgttataacgctgagattctatattgcag

upper sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 10
TTCAGTTGAACTATTTTGGGTCACCTGTGGTCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa---actgttaaggtctttcttattcactgtatgtacatccctgaactttactaggtttatgactcttgattcaccctcaagtgtatttgctttttacttgtctggtatttttttttttttacatggatgttcattattgcag
||| |||||| |||||||||| ||||||||||| || ||||| ||||| ||  | |||||||||||||||||||| |||||||| ||| |||| ||||||||||   |||| |  ||||| | | | |   ||     | || ||  |  ||| |||| ||||  | |||  |     |    ||  |||||  || ||||||||||| |||   || |  ||     ||| | | || ||| |||
TTCTGTTGAATTATTTTGGGTTACCTGTGGTCAATCAGAGGAAAAAACGAACCTAATTGAGGAAGTTTCATGGTTGGATTATGGCCATAGAGGAATGCAGgtaatagactgctctggtctatatcagtttttg-----aaatacc--agtttttctagcttta-aattctgcacctctctattagcctatttcattcttacttgtctgatatagattatggtt-----ggaagcttatcatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259972|gb|BG882880.1|BG882880
EST:     ATTCGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCCC                         GTTTGGTATCCATCTCCAGGTGCTAATTCTTTTAAGCAG
genomic: ATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaaactgtt ... attattgcagGTTTGGTATCCATCTCCAGGTGCTAATTCTTTTAAGCAG