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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtatggaacctgacacctgactgttcatgctttcattgttgaactgcggtatgtttctgtgttttgtgtttacagcaccataacttaacaaatcaccaatctgcaattacctggttgtgacaataacaGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATAGAACCAGATTACATTCCCTGTATCATCTCCA

Basic information

species Glycine max
transcript GLYMA17G35330.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574444|gb|CX547419.1|CX547419
EST:     TCCCAGAAGTTGGCACATCACT                         GGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC
genomic: TCCCAGAAGTTGGCACATCACTggtatggaac ... gacaataacaGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC
EST: gi|21257256|gb|BQ454144.1|BQ454144
EST:     CTCCCAGAAGTTGGCACATCACT                         GGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC
genomic: CTCCCAGAAGTTGGCACATCACTggtatggaac ... gacaataacaGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC
EST: gi|57574763|gb|CX547738.1|CX547738
EST:     CCAGAAGTTGGCACATCACT                         GGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC
genomic: CCAGAAGTTGGCACATCACTggtatggaac ... gacaataacaGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaccataacttaacaaatcaccaatctgcaattacctggttgtgacaataacaGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATAGAACCAGATTACATTCCCTGTATCATCTCCA
         acttaac  putative branch site (score: 3)
      ataacttaacaaat  TA-rich tract